Saturday, November 20, 2010
Disease
- Shive HR, West RR, Embree LJ, Azuma M, Sood R, Liu P, Hickstein DD. brca2 in zebrafish ovarian development, spermatogenesis, and tumorigenesis. Proc Natl Acad Sci U S A. 2010 Nov 9;107(45):19350-5. Epub 2010 Oct 25. PubMed PMID: 20974951.
- Jain S, Heutink P. From single genes to gene networks: high-throughput-high-content screening for neurological disease. Neuron. 2010 Oct 21;68(2):207-17. Review. PubMed PMID: 20955929.
Eye Disease
- Linder B, Dill H, Hirmer A, Brocher J, Lee GP, Mathavan S, Bolz HJ, Winkler C, Laggerbauer B, Fischer U. Systemic splicing factor deficiency causes tissue-specific defects: A zebrafish model for Retinitis pigmentosa. Hum Mol Genet. 2010 Nov 3. [Epub ahead of print] PubMed PMID: 21051334.
Development
- Lek M, Dias JM, Marklund U, Uhde CW, Kurdija S, Lei Q, Sussel L, Rubenstein JL, Matise MP, Arnold HH, Jessell TM, Ericson J. A homeodomain feedback circuit underlies step-function interpretation of a Shh morphogen gradient during ventral neural patterning. Development. 2010 Dec;137(23):4051-60. PubMed PMID: 21062862.
- Green AA, Kennaway JR, Hanna AI, Bangham JA, Coen E. Genetic Control of Organ Shape and Tissue Polarity. PLoS Biol. 2010 Nov 9;8(11):e1000537. PubMed PMID: 21085690.
- Cui ML, Copsey L, Green AA, Bangham JA, Coen E. Quantitative Control of Organ Shape by Combinatorial Gene Activity. PLoS Biol. 2010 Nov 9;8(11):e1000538. PubMed PMID: 21085695.
Eye Development
- Billings NA, Emerson MM, Cepko CL. Analysis of Thyroid Response Element Activity during Retinal Development. PLoS One. 2010 Oct 29;5(10):e13739. PubMed PMID: 21060789; PubMed Central PMCID: PMC2966421.
- Phillips MJ, Otteson DC. Differential expression of neuronal genes in Muller glia in two- and three-dimensional cultures. Invest Ophthalmol Vis Sci. 2010 Nov 4. [Epub ahead of print] PubMed PMID: 21051699.
Stem Cells
- Hanna JH, Saha K, Jaenisch R. Pluripotency and cellular reprogramming: facts, hypotheses, unresolved issues. Cell. 2010 Nov 12;143(4):508-25. PubMed PMID: 21074044.
- Marchetto MC, Carromeu C, Acab A, Yu D, Yeo GW, Mu Y, Chen G, Gage FH, Muotri AR. A model for neural development and treatment of rett syndrome using humaninduced pluripotent stem cells. Cell. 2010 Nov 12;143(4):527-39. PubMed PMID: 21074045.
Zebrafish
- Newman M, Lardelli M. A hyperactive sleeping beauty transposase enhances transgenesis in zebrafish embryos. BMC Res Notes. 2010 Nov 4;3(1):282. [Epub ahead of print] PubMed PMID: 21050486.
Genomics
- Wyart M, Botstein D, Wingreen NS. Evaluating Gene Expression Dynamics Using Pairwise RNA FISH Data. PLoS Comput Biol. 2010 Nov 4;6(11):e1000979. PubMed PMID: 21079668; PubMed Central PMCID: PMC2973809.
Systems Biology
- Lehner B. Conflict between Noise and Plasticity in Yeast. PLoS Genet. 2010 Nov 4;6(11):e1001185. PubMed PMID: 21079670; PubMed Central PMCID: PMC2973811.
- Li J, Yuan Z, Zhang Z. The cellular robustness by genetic redundancy in budding yeast. PLoS Genet. 2010 Nov 4;6(11):e1001187. PubMed PMID: 21079672; PubMed Central PMCID: PMC2973813.
Ethics, Society and Legal Issues
- Johnson DG. The role of ethics in science and engineering. Trends Biotechnol. 2010 Sep 9. [Epub ahead of print] PubMed PMID: 20832883.
Thursday, November 18, 2010
Reptilian heart development and the molecular basis of cardiac chamber evolution. Nature 461, 95-98 (3 September 2009). It also has some really nice photos. Enjoy!
Saturday, November 13, 2010
Retina & regeneration
- Corbo JC, Lawrence KA, Karlstetter M, Myers CA, Abdelaziz M, Dirkes W, Weigelt K, Seifert M, Benes V, Fritsche LG, Weber BH, Langmann T. CRX ChIP-seq reveals the cis-regulatory architecture of mouse photoreceptors. Genome Res. 2010 Nov;20(11):1512-25. Epub 2010 Aug 6. PubMed PMID: 20693478.
- Ramachandran R, Fausett BV, Goldman D. Ascl1a regulates Müller glia dedifferentiation and retinal regeneration through a Lin-28-dependent, let-7 microRNA signalling pathway. Nat Cell Biol. 2010 Nov;12(11):1101-7. Epub 2010 Oct 10. PubMed PMID: 20935637; PubMed Central PMCID: PMC2972404.
- Choy SW, Cheng CW, Lee ST, Li VW, Hui MN, Hui CC, Liu D, Cheng SH. A cascade of irx1a and irx2a controls shh expression during retinogenesis. Dev Dyn. 2010 Nov 2;. [Epub ahead of print]
- Choi JH, Law MY, Chien CB, Link BA, Wong RO. In vivo development of dendritic orientation in wild-type and mislocalized retinal ganglion cells. Neural Dev. 2010 Nov 2;5(1):29. [Epub ahead of print] PubMed PMID: 21044295.
Development
- Apodaca G. Opening ahead: early steps in lumen formation revealed. Nat Cell Biol. 2010 Nov;12(11):1026-8. PubMed PMID: 21045801.
- Morris JA, Royall JJ, Bertagnolli D, Boe AF, Burnell JJ, Byrnes EJ, Copeland C, Desta T, Fischer SR, Goldy J, Glattfelder KJ, Kidney JM, Lemon T, Orta GJ, Parry SE, Pathak SD, Pearson OC, Reding M, Shapouri S, Smith KA, Soden C, Solan BM, Weller J, Takahashi JS, Overly CC, Lein ES, Hawrylycz MJ, Hohmann JG, Jones AR. Divergent and nonuniform gene expression patterns in mouse brain. Proc Natl Acad Sci U S A. 2010 Nov 2;107(44):19049-54. Epub 2010 Oct 18. PubMed PMID: 20956311.
- Pedersen MT, Helin K. Histone demethylases in development and disease. Trends Cell Biol. 2010 Nov;20(11):662-71. Epub 2010 Sep 20. PubMed PMID: 20863703.
Gene regulatory network & Systems biology
- Cotterell J, Sharpe J. An atlas of gene regulatory networks reveals multiple three-gene mechanisms for interpreting morphogen gradients. Mol Syst Biol. 2010 Nov 2;6:425. PubMed PMID: 21045819.
- Salazar C, Brümmer A, Alberghina L, Höfer T. Timing control in regulatory networks by multisite protein modifications. Trends Cell Biol. 2010 Nov;20(11):634-41. Epub 2010 Sep 23. PubMed PMID: 20869247.
Disease
- Van Broeckhoven C. The future of genetic research on neurodegeneration. Nat Med. 2010 Nov;16(11):1215-7. Epub 2010 Sep 21. PubMed PMID: 21052076.
- Jucker M. The benefits and limitations of animal models for translational research in neurodegenerative diseases. Nat Med. 2010 Nov;16(11):1210-4. Epub 2010 Sep 21. PubMed PMID: 21052075.
- Haass C. Initiation and propagation of neurodegeneration. Nat Med. 2010 Nov;16(11):1201-4. Epub 2010 Sep 21. PubMed PMID: 21052073.
- Jacobson SG, Cideciyan AV. Treatment possibilities for retinitis pigmentosa. N Engl J Med. 2010 Oct 21;363(17):1669-71. PubMed PMID: 20961252.
Saturday, November 6, 2010
Immunity
- Mallery DL, McEwan WA, Bidgood SR, Towers GJ, Johnson CM, James LC. Antibodies mediate intracellular immunity through tripartite motif-containing 21 (TRIM21). Proc Natl Acad Sci U S A. 2010 Nov 2. [Epub ahead of print] PubMed PMID: 21045130.
Medicine
- Zrenner E, Bartz-Schmidt KU, Benav H, Besch D, Bruckmann A, Gabel VP, Gekeler F, Greppmaier U, Harscher A, Kibbel S, Koch J, Kusnyerik A, Peters T, Stingl K, Sachs H, Stett A, Szurman P, Wilhelm B, Wilke R. Subretinal electronic chips allow blind patients to read letters and combine them to words. Proc Biol Sci. 2010 Nov 3. [Epub ahead of print] PubMed PMID: 21047851.]
Gene regulatory network
- Kuo D, Licon K, Bandyopadhyay S, Chuang R, Luo C, Catalana J, Ravasi T, Tan K, Ideker T. Coevolution within a transcriptional network by compensatory trans and cis mutations. Genome Res. 2010 Oct 26;. [Epub ahead of print]
Genomics
- Human genome: Genomes by the thousand. Nature. 2010 Oct 28;467(7319):1026-7. PubMed PMID: 20981067.
- Nielsen R. Genomics: In search of rare human variants. Nature. 2010 Oct 28;467(7319):1050-1. PubMed PMID: 20981085.
- Luebeck EG. Cancer: Genomic evolution of metastasis. Nature. 2010 Oct 28;467(7319):1053-5. PubMed PMID: 20981088.
- 1000 Genomes Project Consortium, Durbin RM, Abecasis GR, Altshuler DL, Auton A, Brooks LD, Durbin RM, Gibbs RA, Hurles ME, McVean GA. A map of human genome variation from population-scale sequencing. Nature. 2010 Oct 28;467(7319):1061-73. PubMed PMID: 20981092.
- Lane N, Martin W. The energetics of genome complexity. Nature. 2010 Oct 21;467(7318):929-34. PubMed PMID: 20962839.
Development
- Varner VD, Voronov DA, Taber LA. Mechanics of head fold formation: investigating tissue-level forces during early development. Development. 2010 Nov;137(22):3801-11. Epub 2010 Oct 7. PubMed PMID: 20929950.
Retina
- Curcio CA, Sloan KR, Kalina RE, Hendrickson AE. Human photoreceptor topography. J Comp Neurol. 1990 Feb 22;292(4):497-523. PubMed PMID: 2324310.
Behaviour
- Cachat J, Stewart A, Grossman L, Gaikwad S, Kadri F, Chung KM, Wu N, Wong K, Roy S, Suciu C, Goodspeed J, Elegante M, Bartels B, Elkhayat S, Tien D, Tan J, Denmark A, Gilder T, Kyzar E, Dileo J, Frank K, Chang K, Utterback E, Hart P, Kalueff AV. Measuring behavioral and endocrine responses to novelty stress in adult zebrafish. Nat Protoc. 2010 Oct;5(11):1786-99. Epub 2010 Oct 14. PubMed PMID: 21030954.
Neuroscience
- Pyc MA, Rawson KA. Why testing improves memory: mediator effectiveness hypothesis. Science. 2010 Oct 15;330(6002):335. PubMed PMID: 20947756.
Imaging
- Ariga J, Walker SL, Mumm JS. Multicolor Time-lapse Imaging of Transgenic Zebrafish: Visualizing Retinal Stem Cells Activated by Targeted Neuronal Cell Ablation. J Vis Exp. 2010 Sep 20;(43). pii: 2093. doi: 10.3791/2093. PubMed PMID: 20972390.
Stem cells
- Pera MF. Defining pluripotency. Nat Methods. 2010 Nov;7(11):885-7. PubMed PMID: 21030963.
- Verzi MP, Shivdasani RA. Stem cells: The intestinal-crypt casino. Nature. 2010 Oct 28;467(7319):1055-6. PubMed PMID: 20981089.
Chromatin remodeling
- Saladi SV, Keenen B, Marathe HG, Qi H, Chin KV, de la Serna IL. Modulation of extracellular matrix/adhesion molecule expression by BRG1 is associated with increased melanoma invasiveness. Mol Cancer. 2010 Oct 22;9(1):280. [Epub ahead of print] PubMed PMID: 20969766.
Cdk5
- He L, Zhang Z, Yu Y, Ahmed S, Cheung NS, Qi RZ. The neuronal p35 activator of Cdk5 is a novel F-actin binding and bundling protein. Cell Mol Life Sci. 2010 Oct 26. [Epub ahead of print] PubMed PMID: 20976519.
Ethics, Society and Legal Issues
- Udesky L. The ethics of direct-to-consumer genetic testing. Lancet. 2010 Oct 23;376(9750):1377-8. PubMed PMID: 20979325.
- Macilwain C. Scientists vs engineers: this time it’s financial. Nature. 2010 Oct 21;467(7318):885. PubMed PMID: 20962798.
Funding
- Brumfiel G. UK science funds in limbo. Nature. 2010 Oct 21;467(7318):894. PubMed PMID: 20962813.
- Gilbert N. Ireland defends research from cuts. Nature. 2010 Oct 21;467(7318):895. PubMed PMID: 20962814.