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2011-02-27 New articles we read this week

From the news

Genomics

  • Xu Z, Wei W, Gagneur J, Clauder-Münster S, Smolik M, Huber W, Steinmetz LM. Antisense expression increases gene expression variability and locus interdependency. Mol Syst Biol. 2011 Feb 15;7:468. PubMed PMID: 21326235.
  • Tewhey R, Bansal V, Torkamani A, Topol EJ, Schork NJ. The importance of phase information for human genomics. Nat Rev Genet. 2011 Mar;12(3):215-223. Epub 2011 Feb 8. PubMed PMID: 21301473.

Development

  • Wu D, Freund JB, Fraser SE, Vermot J. Mechanistic Basis of Otolith Formation during Teleost Inner Ear Development. Dev Cell. 2011 Feb 15;20(2):271-8. PubMed PMID: 21316594.
  • Davidson EH. Evolutionary bioscience as regulatory systems biology. Dev Biol. 2011 Feb 11. [Epub ahead of print] PubMed PMID: 21320483.

Retina

  • Jusuf PR, Almeida AD, Randlett O, Joubin K, Poggi L, Harris WA. Origin and determination of inhibitory cell lineages in the vertebrate retina. J Neurosci. 2011 Feb 16;31(7):2549-62. PubMed PMID: 21325522.

Gene regulatory network

  • Macneil L, Walhout AJ. Gene regulatory networks and the role of robustness and stochasticity in the control of gene expression. Genome Res. 2011 Feb 4. [Epub ahead of print] PubMed PMID: 21324878.
  • Taati S, Formenti E, Comet JP, Bernot G. On the impact of the distance between two genes on their interaction curve. J Math Biol. 2011 Feb 15. [Epub ahead of print] PubMed PMID: 21327639.

Systems biology

  • Plotkin JB. Cell biology. The lives of proteins. Science. 2011 Feb 11;331(6018):683-4. PubMed PMID: 21310990.
  • Eden E, Geva-Zatorsky N, Issaeva I, Cohen A, Dekel E, Danon T, Cohen L, Mayo A, Alon U. Proteome half-life dynamics in living human cells. Science. 2011 Feb 11;331(6018):764-8. Epub 2011 Jan 13. PubMed PMID: 21233346.
  • Minc N, Burgess D, Chang F. Influence of cell geometry on division-plane positioning. Cell. 2011 Feb 4;144(3):414-26. PubMed PMID: 21295701.
  • Gibson WT, Veldhuis JH, Rubinstein B, Cartwright HN, Perrimon N, Brodland GW, Nagpal R, Gibson MC. Control of the mitotic cleavage plane by local epithelial topology. Cell. 2011 Feb 4;144(3):427-38. PubMed PMID: 21295702.

Stem cells

  • Bock C, Kiskinis E, Verstappen G, Gu H, Boulting G, Smith ZD, Ziller M, Croft GF, Amoroso MW, Oakley DH, Gnirke A, Eggan K, Meissner A. Reference Maps of Human ES and iPS Cell Variation Enable High-Throughput Characterization of Pluripotent Cell Lines. Cell. 2011 Feb 4;144(3):439-52. PubMed PMID: 21295703.