{"id":324,"date":"2010-09-11T14:20:21","date_gmt":"2010-09-11T19:20:21","guid":{"rendered":"https:\/\/leung.bio.purdue.edu\/blog\/?p=324"},"modified":"2010-09-16T20:16:14","modified_gmt":"2010-09-17T01:16:14","slug":"2010-09-11-new-articles-we-read-this-week","status":"publish","type":"post","link":"https:\/\/leung.bio.purdue.edu\/blog\/2010-09-11-new-articles-we-read-this-week\/","title":{"rendered":"2010-09-11 New articles we read this week"},"content":{"rendered":"

Systems biology and Genomics<\/strong><\/p>\n

    \n
  1. Chen WW, Niepel M, Sorger PK. Classic and contemporary approaches to modeling biochemical reactions. Genes Dev. 2010 Sep 1;24(17):1861-75. PubMed PMID: 20810646.<\/li>\n
  2. Schatz MC, Delcher AL, Salzberg SL. Assembly of large genomes using second-generation sequencing. Genome Res. 2010 Sep;20(9):1165-73. Epub 2010 May 27. PubMed PMID: 20508146.<\/li>\n
  3. Zhuravel D, Fraser D, St-Pierre S, Tepliakova L, Pang WL, Hasty J, K\u00e6rn M. Phenotypic impact of regulatory noise in cellular stress-response pathways. Syst Synth Biol. 2010 Jun;4(2):105-116.<\/li>\n
  4. Levin JZ, Yassour M, Adiconis X, Nusbaum C, Thompson DA, Friedman N, Gnirke A, Regev A. Comprehensive comparative analysis of strand-specific RNA sequencing methods. Nat Methods. 2010 Sep;7(9):709-15. Epub 2010 Aug 15. PubMed PMID: 20711195.<\/li>\n<\/ol>\n

    Imaging<\/strong><\/p>\n

      \n
    1. Peng H, Ruan Z, Long F, Simpson JH, Myers EW. V3D enables real-time 3D visualization and quantitative analysis of large-scale biological image data sets. Nat Biotechnol. 2010 Apr;28(4):348-53. Epub 2010 Mar 14. PubMed PMID: 20231818; PubMed Central PMCID: PMC2857929.<\/li>\n
    2. Peng H, Ruan Z, Atasoy D, Sternson S. Automatic reconstruction of 3D neuron structures using a graph-augmented deformable model. Bioinformatics. 2010 Jun 15;26(12):i38-46. PubMed PMID: 20529931; PubMed Central PMCID: PMC2881396.<\/li>\n
    3. Liu X, Long F, Peng H, Aerni SJ, Jiang M, S\u00e1nchez-Blanco A, Murray JI, Preston E, Mericle B, Batzoglou S, Myers EW, Kim SK. Analysis of cell fate from single-cell gene expression profiles in C. elegans. Cell. 2009 Oct 30;139(3):623-33. PubMed PMID: 19879847.<\/li>\n
    4. Long F, Peng H, Liu X, Kim SK, Myers E. A 3D digital atlas of C. elegans and its application to single-cell analyses. Nat Methods. 2009 Sep;6(9):667-72. Epub 2009 Aug 16. PubMed PMID: 19684595; PubMed Central PMCID: PMC2882208.<\/li>\n
    5. Peng H, Long F, Liu X, Kim SK, Myers EW. Straightening Caenorhabditis elegans images. Bioinformatics. 2008 Jan 15;24(2):234-42. Epub 2007 Nov 19. PubMed PMID: 18025002.<\/li>\n<\/ol>\n

      Medicine<\/strong><\/p>\n

        \n
      1. Physician, know thyself. Lancet. 2010 Sep 4;376(9743):743. PubMed PMID: 20816524.<\/li>\n<\/ol>\n

        Eye disease<\/strong><\/p>\n

          \n
        1. Li L, Nakaya N, Chavali VR, Ma Z, Jiao X, Sieving PA, Riazuddin S, Tomarev SI, Ayyagari R, Riazuddin SA, Hejtmancik JF.\u00a0 A Mutation in ZNF513, a Putative Regulator of Photoreceptor Development, Causes Autosomal-Recessive Retinitis Pigmentosa. Am J Hum Genet. 2010 Aug 25;. [Epub ahead of print] PMID: 20797688<\/li>\n<\/ol>\n

          Neuroscience and behaviour
          \n<\/strong><\/p>\n

            \n
          1. Feitl KE, Ngo V, McHenry MJ.\u00a0 Are fish less responsive to a flow stimulus when swimming? J Exp Biol. 2010 Sep 15;213(Pt 18):3131-7. PubMed PMID: 20802114.<\/li>\n
          2. Youk H, van Oudenaarden A. Microbiology: Altruistic defence. Nature. 2010 Sep 2;467(7311):34-5. PubMed PMID: 20811443.<\/li>\n<\/ol>\n

            Education<\/strong><\/p>\n

              \n
            1. Ditty JL, Kvaal CA, Goodner B, Freyermuth SK, Bailey C, Britton RA, Gordon SG, Heinhorst S, Reed K, Xu Z, Sanders-Lorenz ER, Axen S, Kim E, Johns M, Scott K, Kerfeld CA. Incorporating genomics and bioinformatics across the life sciences curriculum. PLoS Biol. 2010 Aug 10;8(8):e1000448. PubMed PMID: 20711478; PubMed Central PMCID: PMC2919421.<\/li>\n<\/ol>\n

              Stem cell<\/strong><\/p>\n

                \n
              1. Buxboim A, Discher DE. Stem cells feel the difference. Nat Methods. 2010 Sep;7(9):695-7. PubMed PMID: 20805798.<\/li>\n<\/ol>\n","protected":false},"excerpt":{"rendered":"

                Systems biology and Genomics Chen WW, Niepel M, Sorger PK. Classic and contemporary approaches to modeling biochemical reactions. Genes Dev. 2010 Sep 1;24(17):1861-75. PubMed PMID: 20810646. Schatz MC, Delcher AL, Salzberg SL. Assembly of large genomes using second-generation sequencing. Genome Res. 2010 Sep;20(9):1165-73. Epub 2010 May 27. PubMed PMID: 20508146. Zhuravel D, Fraser D, St-Pierre […]<\/p>\n","protected":false},"author":3,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[75],"tags":[],"class_list":["post-324","post","type-post","status-publish","format-standard","hentry","category-journal-watch"],"_links":{"self":[{"href":"https:\/\/leung.bio.purdue.edu\/blog\/wp-json\/wp\/v2\/posts\/324","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/leung.bio.purdue.edu\/blog\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/leung.bio.purdue.edu\/blog\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/leung.bio.purdue.edu\/blog\/wp-json\/wp\/v2\/users\/3"}],"replies":[{"embeddable":true,"href":"https:\/\/leung.bio.purdue.edu\/blog\/wp-json\/wp\/v2\/comments?post=324"}],"version-history":[{"count":3,"href":"https:\/\/leung.bio.purdue.edu\/blog\/wp-json\/wp\/v2\/posts\/324\/revisions"}],"predecessor-version":[{"id":327,"href":"https:\/\/leung.bio.purdue.edu\/blog\/wp-json\/wp\/v2\/posts\/324\/revisions\/327"}],"wp:attachment":[{"href":"https:\/\/leung.bio.purdue.edu\/blog\/wp-json\/wp\/v2\/media?parent=324"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/leung.bio.purdue.edu\/blog\/wp-json\/wp\/v2\/categories?post=324"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/leung.bio.purdue.edu\/blog\/wp-json\/wp\/v2\/tags?post=324"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}