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2011-01-29 New articles we read this week

Neuroscience

  1. Miller G. Social neuroscience. Why loneliness is hazardous to your health. Science. 2011 Jan 14;331(6014):138-40. PubMed PMID: 21233358.

Genomics

  1. Ozsolak F, Milos PM. RNA sequencing: advances, challenges and opportunities. Nat Rev Genet. 2011 Feb;12(2):87-98. Epub 2010 Dec 30. PubMed PMID: 21191423.
  2. Bravo HC, Irizarry RA. Model-based quality assessment and base-calling for second-generation sequencing data. Biometrics. 2010 Sep;66(3):665-74. doi: 10.1111/j.1541-0420.2009.01353.x. Review. PubMed PMID: 19912177; PubMed Central PMCID: PMC2888717.
  3. Taub MA, Corrada Bravo H, Irizarry RA. Overcoming bias and systematic errors in next generation sequencing data. Genome Med. 2010 Dec 10;2(12):87. [Epub ahead of print] PubMed PMID: 21144010.
  4. Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, Magen A, Canidio E, Pagani M, Peluso I, Lin-Marq N, Koch M, Bilio M, Cantiello I, Verde R, De Masi C, Bianchi SA, Cicchini J, Perroud E, Mehmeti S, Dagand E, Schrinner S, Nürnberger A, Schmidt K, Metz K, Zwingmann C, Brieske N, Springer C, Hernandez AM, Herzog S, Grabbe F, Sieverding C, Fischer B, Schrader K, Brockmeyer M,
    Dettmer S, Helbig C, Alunni V, Battaini MA, Mura C, Henrichsen CN, Garcia-Lopez R, Echevarria D, Puelles E, Garcia-Calero E, Kruse S, Uhr M, Kauck C, Feng G, Milyaev N, Ong CK, Kumar L, Lam M, Semple CA, Gyenesei A, Mundlos S, Radelof U, Lehrach H, Sarmientos P, Reymond A, Davidson DR, Dollé P, Antonarakis SE, Yaspo ML, Martinez S, Baldock RA, Eichele G, Ballabio A. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011 Jan 18;9(1):e1000582. PubMed PMID: 21267068.

Genome-Wide Association Study

  1. Shields R. Common disease: are causative alleles common or rare? PLoS Biol. 2011 Jan 18;9(1):e1001009. PubMed PMID: 21267067.
  2. Goldstein DB. The importance of synthetic associations will only be resolved empirically. PLoS Biol. 2011 Jan 18;9(1):e1001008. PubMed PMID: 21267066.
  3. Anderson CA, Soranzo N, Zeggini E, Barrett JC. Synthetic associations are unlikely to account for many common disease genome-wide association signals. PLoS Biol. 2011 Jan 18;9(1):e1000580. PubMed PMID: 21267062.
  4. Wray NR, Purcell SM, Visscher PM. Synthetic Associations Created by Rare Variants Do Not Explain Most GWAS Results. PLoS Biol. 2011 Jan 18;9(1):e1000579. PubMed PMID: 21267061.

Systems Biology

  1. Snijder B, Pelkmans L. Origins of regulated cell-to-cell variability. Nat Rev Mol Cell Biol. 2011 Feb;12(2):119-25. Epub 2011 Jan 12. PubMed PMID: 21224886.

Retina & Retinal Pigment Epithelium

  1. Choi RY, Engbretson GA, Solessio E, Jones GA, Coughlin A, Aleksic I, Zuber ME. Cone Degeneration Following Rod Ablation in a Reversible Model of Retinal Degeneration. Invest Ophthalmol Vis Sci. 2010 Aug 18. [Epub ahead of print] PubMed PMID: 20720220.
  2. Dwyer MA, Kazmin D, Hu P, McDonnell DP, Malek G. Research Resource: Nuclear Receptor Atlas of Human Retinal Pigment Epithelial Cells: Potential Relevance to Age-Related Macular Degeneration. Mol Endocrinol. 2011 Jan 14. [Epub ahead of print] PubMed PMID: 21239617.

Zebrafish

  1. Sánchez-Vázquez FJ, Terry MI, Felizardo VO, Vera LM. Daily Rhythms of Toxicity and Effectiveness of Anesthetics (MS222 and Eugenol) in Zebrafish (Danio Rerio). Chronobiol Int. 2011 Mar.;28(2):109-117. PubMed PMID: 21231872.

Medicine

  1. The Lancet. Religion, organ transplantation, and the definition of death. Lancet. 2011 Jan 22;377(9762):271. PubMed PMID: 21256368.